Searches for Topologically and Three Dimensionally Similar Structures in Proteins
نویسندگان
چکیده
We developed a deductive database system PACADE for analyzing three dimensional and secondary structures of protein. PACADE is equipped with a function to search for similar structures in proteins. Unlike other approaches based on calculation of the inter-atomic root mean square distance, this function is based on logic programming and source level rule rewriting techniques. We describe herein the result of searches for topologically similar structures and three dimensionally similar ones. A user of PACADE can select these two levels of similarities by adding/deleting pre xes. 1:4F#8-Fs: 6e=#Bg3X9)3XIt>pJs9)3X2J, ") 812 J!2,;TEl6hH":j 6-10-1 28E;T7CH~;R: J!2,=w;RC;4|Bg3X, ") 818-01 B@:KI\;T8^>r 4-16-1 35W86E/: 6e=#Bg3XBg3X1!G@3X8&5f2J0dEA;R;q8;9)3X@l96, ") 812 J!2,;TEl6hH":j 6-10-1 49bLZMx5W: El5~Bg3X0e2J3X8&5f=j%R%H%2%N%‘2r@O%;%s%?!<, ") 108 El5~ET9A6hGr6bBf 4-6-1
منابع مشابه
Application of a deductive database system to search for topological and similar three-dimensional structures in protein
A deductive database system PACADE (Protein Atomic Coordinate Analyzer with Deductive Engine) has been developed for protein structure analysis. With this system, super-secondary structures described in logical and declarative rules can be retrieved effectively. For protein structure analysis, comparison of local structures in different proteins is a necessary mean. A function to search for sim...
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